Category: Lab stuff

If you give a girl a microscope

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Be prepared for some crazy photos.

OK so I may be in science communication now but that doesn’t mean I’ve forgotten about my microscopy roots. Sitting in front of a microscope and looking at cool biology is pretty much the main thing I miss about doing bench work. So when I found out that Pacific Northwest National Laboratory (where I am currently working) made a microscope for your smart phone, I knew I needed it.

You just download the pattern from PNNL’s website, 3D print the holder and put a bead on it to use as a lens. Voila. Microscope. And the baseline version magnifies things 100x!

Sign. Me. Up.

One of my coworkers is super into 3D printing right now. So on Friday I told him about my need for one of these microscopes. He left and came back with an already completed microscope that he found in his desk! :D

I put it on my phone and immediately started looking for things to inspect in closer detail. Like this stuffed shark eye (obviously I have stuffed sharks on my desk).

I like that you can see all the fur around his eye.

The lighting in my cubicle is not great for microscoping, however. Just like most things with lenses (cameras, microscopes, etc.), the more zoom or magnification you have, the more light you need. I packed up the microscope to save it for more adventures over the weekend.

Now it’s fun times for you. Below I’ve posted a variety of things that I imaged around my house. You should try to guess what they are. The answers may or may not be at the bottom (don’t cheat!).

Ready?

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    1. Whatever it is, it looks dirty. But I like the grid…

    5. I think this one is my favorite. It’s so artsy. Also hint: this one is the same object as what’s in the photo above it.

    7. “There’s a crack in everything. That’s how the light gets in.”

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Answers!
1. Camping chair, 2. Potassium’s arm, 3. Living room carpet, 4. Kitty fur, 5. Also kitty fur, 6. Kitty ear (poor kitty), 7. Potassium’s shirt, 8. Shark towel, 9. Cobalt’s ear

I love all these pictures because they make science fun and artsy. I think that’s one reason I like microscopes in general. They give you a chance to marvel at how beautiful the world is, especially part of the world that you can’t normally see. Did you have a favorite image above? What would you want to look at up close? I think next I want to try some plants…

What did you do this weekend? Can you believe it’s almost October? I really need to get started on my Halloween costume. In other October news, I’m thinking about doing Inktober again on my Twitter account. I’d have to draw something every day of October. Could be fun…

Horses, plant homes, and more!

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This poor plant still isn’t doing so well but I really like this one flower…

Hey everyone! Looks like I’m sticking to this once a week on Wednesdays post schedule for a little bit. Life is crazy with trying to graduate and all…

A lot of stuff has been happening though so I’ll give you a mini update!

So first of all, two weeks ago, Cobalt and I made a plant home in our office! Look at those happy plantys!

Plants enjoying the last of a sunny day. Also pictured: a buffalo and Jörg the German sheep

Second of all, it’s been snowing a lot…. Not a fan. But at least this picture is pretty.

I’ll admit it. When the snowflakes look like this, I am still a little mesmerized by them. Even when I am grumpy about having to clean off my car to go to work…

Finally, last weekend, we made dumplings with some of our friends for the Chinese New Year! :D This year I got to learn how to make the wrappers too. It was fun rolling them out into perfect circles. I also love folding the dumplings into these cool shapes. This year we put almonds into a few for good luck. Because four of us making/eating the dumplings are hoping to graduate from grad school this year, we decided that eating a dumpling with an almond in it meant that we would definitely graduate this year. We all got almond-filled dumplings so hopefully we will all graduate! :D

Happy year of the horse!

Anyway, in science news, yesterday I finished the last of my repeats for the first part of my project! So minus a few tweaks or running the assays I designed for other people’s experiments, that means I am done with the first part. Now I finally get to focus on the more nebulous and less thought out second part of my project! Things are coming along (even though they are slow)!

Your turn. Tell me about life. It’s February! Is the weather looking any better there because it’s cold and snowy here… Did you watch the Superbowl last weekend? Got any Valentine’s Day plans for next week? Let’s discuss! :D

Back into the fray!

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Hey everyone! I’m back from Germany! It was super fun! First of all, Heidelberg is an adorable town nestled in some mountains in Germany. You should be able to see that from that top picture here. The conference I went to was at EMBL which is a giant laboratory tucked into the forest above Heidelberg. I hung out with my friends as soon as I landed in Heidelberg (adventures will soon be posted) and then spent the next few days being bussed back and forth between the town and the lab for the conference. The conference was awesome. All of the talks were full of innovation and cool science (pretty sure that excitement was the only thing that kept me awake in the face of the death jetlag) and I made a lot of fun international friends! After the conference, I spent one day frolicking in Heidelberg and the surrounding areas with some of the cool people I met at the conference (again with the adventures being posted soon!).

Some more pictures:

Another favorite German word of mine is schloss or castle. I visited the castle with my friends the first day I was there and it was stunning. I learned so much European history… Look forward to a post on the schloss definitely. :)
My last day there, my new found friend T and I went for an epic hike (involving us getting lost a lot) in the mountain next to Heidelberg. The trees were so interesting!

Anyway, now I am back in Colorado. I’m super jetlagged still but life is insane in lab. I have to prepare (read: do multiple experiments) to give a presentation in a few weeks and if I really want to graduate at some point, I have to come up with what will ultimately be the “story” for my thesis. There’s actually a lot to talk about regarding my feelings about graduate school right now so I think maybe that will be in its own post soon.

Random questions below:
How are you guys? Is there anything specific you want me to definitely mention in my Germany (or Boston or San Antonio) posts? Do you want to know my favorite German word (it’s tchüss! – it means bye!)? I’m super frustrated with science/lab right now. Does anyone have any advice for relaxing/getting through hard work times? In other news, I am super excited that Allegiant finally came out today (where was it on my 10 hr flight back from Germany last week?!). Is anyone else a fan of the Divergent trilogy?

In other news, my blog is 3 years old today!!!! How did this happen?!

The eye of the storm

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Success! The cannolis, pizelles, and other Italian desserts made it safely back from Boston (despite getting teased by TSA about the fact that there is more than 3 oz of cream in the cannolis… :/). Yummmmmmmmm…

Hey all! I’m back from the first two of my three conferences, enjoying this little break before I head out to Heidelberg, Germany tomorrow for the third conference! Epic…

How have you guys been? I am all right, despite having a pretty major breakdown about science/life/careers/etc right before I left for the first conference (more on that when I get back from Germany). Both conferences turned out to be really fun.

First I was in San Antonio for SACNAS where I was one of three graduate students from the University of Colorado recruiting future grad students and students for our summer research program (SMART). SACNAS is awesome because it’s both a science conference (with talks and poster presentations etc) but also a huge celebration of all of the cultures that make up this country. It is just such a fun and supportive place to be (just what I needed after feeling so down the day before)! Plus I had a great time bonding with my fellow graduate students. They helped me finish the poster I presented in Boston (and will present in Heidelberg). It turned out really nicely so I am super grateful for their help!

This was from the Pow wow at SACNAS. So many beautiful outfits and dances. We got to dance too and it was awesome!
We got serenaded by a mariachi band while out at dinner in San Antonio!

After recruiting at SACNAS, I took off for Boston for the Salmonella conference! I ended up flying with a bunch of retired Texans who were heading to the east coast to watch the leaves turn. We bonded right away in line for the airplane and it made for a pretty funny experience. Upon arriving in Boston, I met up with my lab mate Titanium and my boss and we headed to the conference together. The conference was kind of intense… who knew there could be 5 days worth of talks (and posters) about Salmonella?! For the most part it was very interesting and exciting to learn about all the different ways people can go about studying such a vicious pathogen. I now feel inspired to build my own super team of scientists from all scientific backgrounds to try to answer some really hard question (let me know if you want to join… I’m going to make us matching T-shirts!). It was also fun because 1) there were people from all over the world attending the conference (new friends!!!!) and 2) Boston turned out to be a really fun city to explore! I can’t wait to share some of my adventures with you but for now I will leave you with these pictures.

My favorite of the random pianos around Boston. I played Heart and Soul on it. :)
Titanium with two of our new friends the last day in Boston! :)

And now I am off to Heidelberg for my final conference. I have been learning some German words/phrases (turns out German is a SUPER fun language to learn) while traveling to my other two conferences. How exciting! Also, I just got an e-mail from some friends over there who are going to pick me up as soon as I get to my hotel and take me exploring! I feel so lucky and excited for this opportunity but also nervous about traveling so far away (even though I just went to Paris) and terrified that I am going to get sick… Maybe I should go buy some Emergen-C….

Now it’s your turn: tell me anything! If you are unsure where to start, you can tell me about a time where you did a lot of traveling in your life. How did you keep from getting sick? How did you go about exploring where ever you were (eating at various restaurants, going on tours, walking around, etc)? What is your favorite activity to keep from getting bored on the airplane? :)

Next step: traveling!

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A picture I took as we left France…

So… in addition to all the other craziness going on in my life right now, I am gearing up to go to not one, not two, but THREE consecutive conferences next week. First step is SACNAS, a conference for minority STEM (science, technology, engineering, and math) students that is near and dear to my heart. I went last year to recruit people for CU and I guess I did such a good job that they asked me to go back this again year! Yay! I am super excited about that! Also SACNAS is in San Antonio, TX this year and I have never been there… oooo new place! Then directly after that, I fly to Boston to attend a conference about Salmonella (for those of you that don’t know, that is what I am studying for my research project) with my friend Titanium and my boss. I have never attended a conference with my boss before so that should be fun. Also, a lot of big name Salmonella people should be there so it will be awesome to meet them and hopefully they can help me with the still mysterious parts of my project. After all of that, I fly back to Colorado for ~ 48 hours before taking off to go to Heidelberg, Germany (!!!!) for a conference about new techniques in microbiology. It is going to be awesome because there will be scientists from all over the world attending this conference! I feel very lucky/excited that I get to go to Europe twice in one year but I am also super nervous because I know absolutely NO German. At least in France, I could read signs and talk to people in my sub par/super slow/sometimes Spanish French. So that will be interesting…. Seeing how I got slightly culture shocked upon landing in France, I’ve bookended my trip to Germany with people that I know in the hopes that that should ease the transition to visiting another new country.

Now it’s your turn! Have you been to/lived in San Antonio, Boston, or Heidelberg? What should I definitely check out/eat/do there? Any travel tips for traveling with a poster roll as my second carryon (thrilling…)?

In other news, what have you guys been reading lately? I just finished Patrick Ness’ newest young adult book More Than This and I am still reeling from the crazy ending! Whoa!

PS – Patrick Ness is one of my favorite authors if you’re looking for a new set of books to read…

May showers bring…

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The Mona Lisa is concerned about seeing Cobalt and me in person in the coming weeks… I would be too… We’re kind of a crazy pair..

You guys… I can count the number of days until I go to Paris on one hand! I am simultaneously jumping for joy and freaking out (it’s kind of awkward to explain). I have been constantly obsessing over one detail or another all while trying to get through my normal life here in Boulder. It’s been an intense week – both with the planning for the trip and just with everything going on with life. I thought today I’d basically give a little photo summary of some of the things that have happened this week.

First of all, the trip. Cobalt and I picked up some euros for me to take with me next week and set up a travel bank account through our bank here for easy access to more cash at any ATM anywhere. I learned something about euros too. Did you know that they get bigger in size in proportion to their amount? Seriously, the guy at the bank showed us the 5 euro note and it is so tiny compared to the bigger bills (and our dollar bills). They’re all so shiny too.

In addition to doing some money things this week, Cobalt and I bought Paris Museum Passes. I’ll give a full review when I get back but I think these guys are going to be awesome. They grant us admission to over 60 museums and landmarks in Paris (including the Louvre and Notre Dame, etc) so we won’t have to wait in line for tickets (apparently this is a thing…). Also, they’re good for four days so that means we can go in and out of places like the Louvre as many times as we want during those four days. I am really excited! The passes arrived yesterday so they’re featured on the top of my blog post today! Next up – we need to plan out what museums/attractions we want to go to and then figure out which attractions should go on the same day…

And now a lab thing. You may recall me mentioning about a month ago that my labmate K did his PhD defense and now has his PhD. Normally after you defend, you get to walk during commencement and be hooded (you get this crazy hood attached to your robes – seriously, google PhD graduation) by your advisor. Well our advisor came all the way back from France for K’s defense but she couldn’t get back for commencement this week. My friend/labmate G and I took matters into our own hands and we held a “commencement” for K yesterday. We asked Cobalt to announce him (Cobalt has this amazing radio announcer voice), we got him a king’s crown and a feather boa to act as his graduation cap and hood, we asked our boss to record a little video so that she could be there in spirit, we got him a stuffed neuron with a graduation cap as a present/”diploma,” we invited all our labmates, and then we all threw confetti and had a little party at the end. I think K appreciated our crazy efforts to make him feel special for commencement. Yay! Congrats again, K! :)

The confetti turned out to be quite a hit. Every time we cleaned it off the floor, someone else would throw it at K…

In the midst of all of this, Colorado has decided that the phrase is actually “May showers bring June flowers…” At least it’s not snowing anymore, right? :-/

Sometimes I just get caught by how beautiful the Flatirons are… They’ve been especially amazing with all the rain/fog we’ve been having lately.

How are you guys doing? Anything fun planned for the weekend? I’m going to France next week and I’m probably going to be super busy/jetlagged so the post schedule is going to get a little crazy. Is there anything you’re dying to hear about (Paris trip planning or otherwise… I know I haven’t talked a lot about our plans for the trip so please feel free to ask away!) before I go?

Reflections on a busy week

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WOW! It’s been a while since I wrote. Thanks grad school for making my life insane for a bit there. It’s funny. I am done with all my qualifying exams and my classes so all I have left to graduate is “just” research. That’s right. Do enough research to be able to publish two scientific papers on new findings and then I can graduate! If only it were that easy… Sometimes the “just research” part of grad school is awesome. You go in, get your work done, you go home, no sweat. Life is great. Sometimes the “just research” part is insane… so insane it makes you wish you still had classes left because at least classes have a finite length and obvious expectations (write this paper? DONE. Study for and take this test? DONE… vs… I looked at bacteria under a microscope for HOURS and I took HUNDREDS OF PICTURES and I still have NO idea what anything means… Whyyyyyyyyyyyy?). Anyway, you get it. Plus we packed up our whole lab and moved it a mile away into a new building. There was some moving drama in there last week too.

ANYWAY – I have been really sad that I haven’t been able to write recently. So much stuff has been going on AND I got tagged by Karyl to write a post on marriage and I am worried that she thinks I forgot about it. Don’t worry Karyl, I’ve been thinking about it all week and I hopefully will be able to finally publish my thoughts tomorrow or Thursday this week! Yay! So, I talked about grad school being dumb and moving being time consuming… What have else I been up to, you ask?

Well, besides apparently freaking out small children at church on Sunday, here are a few things I did since the last time I wrote.

1) Had really good barbecue in Longmont, CO. Seriously. Amazing. Best BBQ I’ve had so far in the state. Go check them out. Obviously skip this recommendation if you are a vegetarian.

2) Moved the lab – already talked about this but here are some pictures:

Old Lab – see that big thing of pink bubble wrap? It was probably 3 times as big when we got it and then we used it and another whole roll up moving all our fragile stuff… intense… There is nothing worse than trying to get lab tape off of bubble wrap for your information…


New Lab – my new bench bubble wrap free! In other new lab news, I learned today that it is about a 2 mile bike ride to the new building and it is almost alllll downhill on the way there. Fun times coming home this summer… :-/

3) Saw President Obama speak at my school. Regardless of your politics, how cool is it to get to see a president speak in person? Obama pictures in a minute. I just want to emphasize on here that part of the awesomeness of all of this was actually all the waiting in line to get into the events center.


We had to wait for the bus…


In the line, we had a race across a random patch of grass/compared our weird feet/did other silly things. If you look closely in the top left hand corner, you can see the line behind us…


We were all distracted by this helicopter that we thought Obama was in but then he drove right past us…


Obama on the jumbo screen of the events center. I’d say that’s a typical Obama face…


Live Obama and jumbo screen Obama in the same shot! Because our lab move day was the same day as Obama’s speech and because that was the same day my boss decided to tell me how much data analysis she needed me to do in the next few days, we didn’t get to get in line until later in the afternoon so we didn’t get the most amazing of seats. But you can still see Obama!

4) Took a road trip with Cobalt to see his family

On the road again… Cobalt and I enjoyed rocking out to crazy mashups (courtesy of Milkman) as we drove along…

Anything exciting going on in your lives? Do you obsessively photograph everything like I do? Discuss!

On the docket for tomorrow (hopefully… or Thursday… sorrrrrrrry) – What do I look forward to in my marriage? Stay tuned. It should be exciting… I have been thinking about what to say for a week now…

Shark Photographs

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So yeah…. I know I usually post a wedding Wednesday post today or actually on Wednesday but this week you are getting shark photos instead. Yeah… I know… not as cool… But I have been so busy helping pack/clean our lab for our big lab move next week that I haven’t even had time to think about a wedding Wednesday post or even think about our wedding. Craziness… All I know is that I have spent waaaaay too much time packing boxes of stuff/cleaning items in the lab with 10% bleach so the movers won’t be afraid to touch them (we have to decontaminate all our instruments and put a green sticker on them to prove their cleanliness before the movers will move things)… but at least the packing is going well. I think we’re ahead of schedule!
In slight wedding news, our invitations are coming along nicely. Our friend T has been making progress and the invitations look awesome so far!!! :D

Anyway, without further ado, sharks! I took these pictures with my new iPhone! First is Gustav and second is Scrarmpl:

Which is your favorite picture? I think Scrarmpl looks annoyed about being second… What is your favorite app for the iPhone if you have one? What is something that takes up all your time so you feel like you can’t focus on the stuff that you want to get done (*coughs* for me it’s cleaning/packing/lab in general getting in the way of wedding planning/sleeping/lurking *coughs*)

Cheez-its in my lab drawer!

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So since I have had at least one lab drawer to call my own, it has contained food in it. I tend to get a bit hangry (hungry/angry…) if I go too long without food and I also love eating so I have provided myself with tasty snacks for years now. Last year, my food drawer became very popular with my lab mates and people actually started bringing in food to repopulate all the food I (and they) ate! It was delicious. The food drawer tends to become a little candy heavy so last time we went out on a late night lab drawer food run (they totally happen… and they are totally cool… we went to Target at 9:30 on Saturday night… and it was awesome… moving on…), I grabbed a box of Cheez-its to go with our delicious candy choices. The Cheez-its were the best idea ever. They didn’t even last the week. I had to run to the store by our house and get more… and here they are… ready to make me happy whenever I go searching through my lab drawer for a snack (which is often)… We are moving our lab next month and I haven’t been able to check out the new desk areas for a suitable replacement lab food drawer… I hope it will work out…

What about you? Do you get hangry? Do you have a drawer of food by your desk at work? How about at home? For fellow CU readers, are you going to come by my desk to get a snack? Should I stock up? ;)

Portrait: Congrats, Grads!

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Last week, I went to see a bunch of my friends graduate with degrees in Molecular, Cellular, and Developmental Biology! Two of them got bachelors degrees and two of them got PhDs! This is a picture of my friend Chris, who is now a Doctor of Philosophy. Yes… He is now Dr. Chris! Anyway, I brought my Nikon D80 and 18-70 mm lens to the ceremony and worked on my people photography skills. In general, I have really been trying to work on my photo composition skills so the graduation ceremony was good practice for that too!
While shooting the graduation, I realized I get lazy with my autofocus setting on the D80. Sometimes, I try to rearrange my shot so that I don’t have to change the focus point on the lens instead of changing the focus point to match my shot. That seems a little silly when you think about it! I wonder if I should make myself go back to manually focusing all my pictures in order to get myself in the habit of composing a shot and not worrying about whether I can get my subject exactly in the middle of that “focus here” dot… :-/